All functions

add_pointer_struct

Adds Pointer Structure to R objects for use in Pomp

aggregate_model_internal

An Internal Function to Aggregate Model Output Using other Idmodelr functions.

aggregate_model

A Function to Apply Multiple Aggregations to Model Output

balance_polymod

Function to Balance a POLYMOD Like Matrix Using Population Data

clean_polymod

Clean a POLYMOD Like Mixing Matrix

combine_strat_model_output

Reduces the Dimensionality of a Stratifed Model

combine_to_age_model

Combine an Infectious Disease Model To a Demographic Model

estimate_norm_dist_from_ci

A Function to Estimate a Normal Distribution from Credible or Confidence Intervals

gather_strat_multi_variable

A Function to Gather Multiple Stratified Variables into a Tidy Format

gather_strat_variable

A Function to Gather a Stratified Variable into a Tidy Format

generate_parameter_permutations

A Function to Generate Parameter Permutations

interactive_plot

A Utility Function that Controls if a Plot is Returned/Printed and if it is Interactive.

model_df_to_vector

Extracts a Single Column, Summarises if from Simulation

plot_model_comparision_internal

Compare a single vector of output from two models

plot_model_comparision

Compare Deterministic Model Trajectories and Stochastic Mean Field Dynamics

plot_model

Summarise and Plot Model Trajectories

save_data

A Function to Save Results in Multiple Formats

scenario_analysis

A Function to Perform Scenario Analysis for a Generic Model Object.

SEI_demo_ode

A Susceptible-Exposed-Infected Infectious Disease Model with Simple Demographics

SEI_ode

A Simple Susceptible-Exposed-Infected Infectious Disease Model

SEIR_demo_ode

A Simple Susceptible-Exposed-Infected-Recovered Infectious Disease Model with Simple Demographics

SEIR_ode

A Simple Susceptible-Exposed-Infected-Recovered Infectious Disease Model

SHLIR_demo_ode

A Simple Susceptible-High-risk-latent-Low-risk-latent-Infected-Recovered Infectious Disease Model with demographics

SHLIR_ode

A Simple Susceptible-High-risk-latent-Low-risk-latent-Infected-Recovered Infectious Disease Model

SHLITR_risk_group_ode

A Simple Susceptible-High-risk-latent-Low-risk-latent-Infected-Treated-Recovered Infectious Disease Model with demographics

SI_demo_ode

A Susceptible-Infected Infectious Disease Model with Simple Demographics

SI_ode

A Simple Susceptible-Infected Infectious Disease Model

simulate_model

A Function to Simulate a Model from a Generic Simulation Function, with Pre and Post Processing

solve_ode

A Simple Wrapper for lsoda

summarise_model

Summarise Model Trajectories

summarise_strat_var

Sum a Stratified Variable

summarise_var_by_strat

Sum a Stratified Variable by Stratification Level