Reference

Data Data supplied with the package.
tb_interventions_timeline	Tuberculosis Interventions Timeline
tb_not_ew	Tuberculosis Notifications in England and Wales
Cleaning and munging functions Clean and munge the various raw data sources
clean_and_munge_england_births()	A Function to Clean and Merge Observed and Projected Births in England
clean_and_munge_england_life_expectancy()	A Function to Clean and Munge Life Expectancy Estimates from England
clean_demographics_uk()	Clean and Munge UK Demographic Data
clean_labour_force_survey()	Load and Clean Labour Force Survey Data
clean_munge_ets_2016()	Clean and Munge 2016 Enhanced Tuberculosis Surviellance Data
calculate_incidence_ets_lfs_ons()	Function to Calculate Incidence Rates from ETS and Demographic Data
combine_ons_with_lfs()	A Function that Combines the ONS Demographic Data, with the LFS Demographic Data
Helper functions Functions used to help clean and munge data.
est_inc_crude_adj()	Function to Estimate Age Adjusted Incidence
extract_case_counts()	Extract Case Counts from the ETS Data
form_df_epiR_inc_rate()	Function to Split by Country of Birth and Format for epiR
case_rate()	Function to Estimate the Case Rate for a Given Variable, stratified by given variables, dependant on age, year, agegrp2, and uk birth status. Missing data for the rate variable is dropped
Plot Plotting functions for the included data and for the newly generated data.
plot_historic_prop_pul_tb()	Plot Historic Proportions of Pulmonary/Extra-Pulmonary TB
plot_historic_tb_ew()	Plot Historic TB Notifications in England and Wales
plot_pop_age_compare_ons_lfs()	A Function to Plot Differences Between LFS and ONS Data
Utilities Utility functions.
save_data()	A Function to Save Results in Multiple Formats