R-package

getTBinR

Quickly and easily import analysis ready TB burden data, from the World Health Orgnaisation (WHO), into R. The aim of the package is to speed up access to high quality TB burden data, using a simple R interface. Generic plotting functions are provided to allow for rapid graphical exploration of the WHO TB data. This package is inspired by a blog post, which looked at WHO TB incidence rates. See here for the WHO data permissions.

idmodelr

R package that contains utility functions for infectious disease modelling. It’s main functionality is to facilitate the use of other available modelling packages such as pomp. Although, it does offer some basic modelling functionality itself. The source code is available on here

prettypublisher

R package to help in formatting R markdown documents into a publishable format. The source code is available on here

tbinenglanddataclean

R package containing the scripts required to clean data from the Enhanced Tuberculosis Surveillance system, and the Labour Force Survey, and to then calculate Tuberculosis incidence. The source code is available here